io.github.galaxyproject/galaxy-mcp

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

io.github.galaxyproject/galaxy-mcp · Repository · version 1.3.0 · 39 stars · listed from registry

Install

The sweep installs into a clean prefix, but this is the command a user would run:

uvx galaxy-mcp

Needs credentials: GALAXY_URL, GALAXY_API_KEY. The probe used placeholder values, so an amber needs credentials result below means the server asked for the real ones, not that it is broken. Maintainers: how to go green.

Results by platform

Linux

installs and connects2026-08-15 · probed over pypi

1 recorded run, oldest first.

tools/list returned 31 tools.

connect search_tools_by_name get_tool_details get_tool_run_examples get_tool_citations run_tool get_tool_panel create_history search_tools_by_keywords get_server_info get_user get_histories list_history_ids get_history_details get_history_contents get_job_details get_dataset_details get_collection_details download_dataset upload_file upload_file_from_url get_invocations get_iwc_workflows search_iwc_workflows get_iwc_workflow_details recommend_iwc_workflows import_workflow_from_iwc list_workflows get_workflow_details invoke_workflow cancel_workflow_invocation

macOS

installs and connects2026-08-15 · probed over pypi

1 recorded run, oldest first.

tools/list returned 31 tools.

Windows

installs and connects2026-08-15 · probed over pypi

1 recorded run, oldest first.

tools/list returned 31 tools.

Badge

Paste this into the project README to show the current result:

[![does it install](https://img.shields.io/endpoint?url=https://doesitinstall.com/badge/io.github.galaxyproject__galaxy-mcp.json)](https://doesitinstall.com/s/io.github.galaxyproject__galaxy-mcp.html)